AT3G16600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G50410.1); Has 22813 Blast hits to 14480 proteins in 1530 species: Archae - 90; Bacteria - 6320; Metazoa - 5518; Fungi - 5136; Plants - 2281; Viruses - 112; Other Eukaryotes - 3356 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5652839..5655670 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72999.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 638 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDTMDMSSG SDEEVQEEKT TVNERVIYQA ALQDLKQPKT EKDLPPGVLT VPLMRHQKIA LNWMRKKEKR SRHCLGGILA DDQGLGKTIS TISLILLQKL 101: KSQSKQRKRK GQNSGGTLIV CPASVVKQWA REVKEKVSDE HKLSVLVHHG SHRTKDPTEI AIYDVVMTTY AIVTNEVPQN PMLNRYDSMR GRESLDGSSL 201: IQPHVGALGR VRWLRVVLDE AHTIKNHRTL IAKACFSLRA KRRWCLTGTP IKNKVDDLYS YFRFLRYHPY AMCNSFHQRI KAPIDKKPLH GYKKLQAILR 301: GIMLRRTKEW SFYRKLELNS RWKFEEYAAD GTLHEHMAYL LVMLLRLRQA CNHPQLVNGY SHSDTTRKMS DGVRVAPREN LIMFLDLLKL SSTTCSVCSD 401: PPKDPVVTLC GHVFCYECVS VNINGDNNTC PALNCHSQLK HDVVFTESAV RSCINDYDDP EDKNALVASR RVYFIENPSC DRDSSVACRA RQSRHSTNKD 501: NSISGLVCAM LMSLKAGNLG LNMVAASHVI LLDLWWNPTT EDQAIDRAHR IGQTRAVTVT RIAIKNTVEE RILTLHERKR NIVASALGEK NWQKFCDSTN 601: TRRSRISVFW CVEYPRVFID KRNKTFSYLI SHKCECNE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)