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AT3G16555.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.906
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G51171.1); Has 926 Blast hits to 908 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 926; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB022217EMBL:AP000373EMBL:CP002686EnsemblPlants:AT3G16555
EnsemblPlants:AT3G16555.1entrez:820904GeneID:820904Gramene:AT3G16555.1
InParanoid:Q9LUS9InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451
KEGG:ath:AT3G16555OMA:YAPNFIPPaxDb:Q9LUS9Pfam:PF00646
Pfam:PF07734Pfam:Q9LUS9Pfscan:PS50181PRO:PR:Q9LUS9
PROSITE:PS50181ProteinModelPortal:Q9LUS9Proteomes:UP000006548RefSeq:NP_566553.1
SMART:SM00256SMR:Q9LUS9SUPFAM:SSF81383TAIR:AT3G16555
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.53336UniProt:Q9LUS9
Coordinates (TAIR10) chr3:+:5633426..5634542
Molecular Weight (calculated) 40888.40 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.02
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLLPWELEE DILSRLPPRS LVQFRSVCKR WNALFDVKSF NKDQFARARP QFIFITDSKI YSIEIIGLDG VDPTIKLHVL DSSGIPYREW KFAYLTITAC
101: DGRWIKWIEY ENKGFNVCGV GYDNTRPEKV YKILEYLECR REESSNACYQ RVAIYECASH AFKFIDTSNK VWFISDVQRY SVCLNGNLYW LSFDDFRILC
201: FDFSREIVKP FCLLPCRKFD KCDLLALQVF KGDRLSLLNQ CCKTRTIEIW VTKKKIDSSN NNGSDEVVWI SLLTLPPNNL PNLFIVCYGI SYFIYDKTTL
301: IIYCEDENTS AACIYIIRGD LFKKFEIDSS AFFCYHCVYA PNFIPLPLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)