AT3G16340.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pleiotropic drug resistance 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pleiotropic drug resistance 1 (PDR1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5539897..5546263 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 159777.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.58 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1411 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: METLSRSLSK SLGELLASNS NNHFSRRSGS TIDDHDEEAL KWAALEKLPT FARLRTTIIH PHEDLVDVTK LGVDDRQKFI DSIFKVTEED NEKFLKKFRN 0101: RIDRVRIKLP TVEVRFEKVT IEANCHIGKR ALPTLPNAAL NIAERGLRLL GFNFTKTTKV TILRDVSGII KPSRMTLLLG PPSSGKTTLL LALAGKLDQS 0201: LKVTGRVTYN GHGLEEFVPQ KTSAYISQND VHVGVMTVQE TLDFSARCQG VGTRYDLLSE LVRREKDAGI LPEPEVDLFM KSIAAGNVKS SLITDYTLRI 0301: LGLDICKDTV VGDEMIRGIS GGQKKRVTTG PTKTLFMDEI STGLDSSTTY QIVKCLQEIV RFTDATVLMS LLQPAPETFE LFDDIILLSE GQIVYQGPRD 0401: HVLTFFETCG FKCPDRKGTA DFLQEVTSRK DQEQYWADSK KPYSYISVSE FSKRFRTFHV GANLEKDLSV PYDRFKSHPA SLVFKKHSVP KSQLFKVCWD 0501: RELLLMKRNA FFYITKTVQI IIMALIASTV YLRTEMGTKN ESDGAVYIGA LMFSMIVNMF NGFAELALMI QRLPVFYKQR DLLFHPPWTF SLPTFLLGIP 0601: ISIFESVVWV TITYYMIGFA PELSRFLKHL LVIFLTQQMA GGIFRFIAAT CRSMILANTG GALVILLLFL LGGFIVPRGE IPKWWKWAYW VSPMAYTYDA 0701: LTVNEMLAPR WINQPSSDNS TSLGLAVLEI FDIFTDPNWY WIGVGGILGF TVLFNILVTL ALTFLNPLEK QQAVVSKENT EENRAENGSK SKSIDVKRGM 0801: VLPFTPLTMS FDNVNYYVDM PKEMKEQGVS KDKLQLLKEV TGVFRPGVLT ALMGVSGAGK TTLMDVLAGR KTGGYIEGDI RISGFPKRQE TFARISGYCE 0901: QNDIHSPQVT VKESLIYSAF LRLPKEVTKY EKMRFVDEVM ELVELESLKD AVVGLPGITG LSTEQRKRLT IAVELVANPS IIFMDEPTSG LDARAAAIVM 1001: RTVRNTVDTG RTVVCTIHQP SIDIFEAFDE LLLLKRGGQV IYAGPLGQNS HKIIEYFQAI HGVPKIKEKY NPATWMLEVS SMAAEAKLEI DFAEHYKTSS 1101: LYQQNKNLVK ELSTPPQGAS DLYFSTRFSQ SLLGQFKSCL WKQWITYWRT PDYNLARFFF TLAAAVMLGS IFWKVGTKRE NANDLTKVIG AMYAAVLFVG 1201: VNNSSSVQPL IAVERSVFYR ERAAEMYSAL PYALAQVVCE IPYVLIQTTY YTLIIYAMMC FEWTLAKFFW FYFVSFMSFL YFTYYGMMTV ALTPNQQVAA 1301: VFAGAFYGLF NLFSGFVIPR PRIPKWWIWY YWICPVAWTV YGLIVSQYGD VEDTIKVPGM ANDPTIKWYI ENHYGYDADF MIPIATVLVG FTLFFAFMFA 1401: FGIRTLNFQQ R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)