AT3G16260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNAse Z4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a tRNase Z. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tRNAse Z4 (TRZ4); FUNCTIONS IN: 3'-tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3'-end processing, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease Z (InterPro:IPR013471); BEST Arabidopsis thaliana protein match is: tRNAse Z3 (TAIR:AT1G52160.1); Has 6299 Blast hits to 4396 proteins in 1654 species: Archae - 442; Bacteria - 4351; Metazoa - 254; Fungi - 243; Plants - 108; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5509397..5513118 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104732.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.98 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 942 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTSSMPQNL SLFGFSPLKS SSFALILRPF SLYPPIFASS SPAPSRRPPR TAGYRRSGPS PPRRKWSSFE EQKRKGRSPM EKDKAISFNH SSDSFEFNKR 101: RAEGLDKVDK PKKNLKRNTR TLNPTNTIAY VQILGTGMDT QDTSPSVLLF FDKQRFIFNA GEGLQRFCTE HKIKLSKVDH IFLSRVCSET AGGLPGLLLT 201: LAGIGEQGLS VNVWGPSDLK YLVDAMRSFI PRAAMVHTRS FGPSLNISDS APQIGLSKPK DDAYVLVDDE VVKISAILLE PSRLEESGSK PGETAVIYVC 301: ELPEIKGKFD PKKAMALGLR AGPKYSYLQS GQSVKSDFKD ITVHPSDVMG PSVPGPVVLL VDCPTESHAE ELLSIPSMKT YYSCLDNSTD GAKLVNCIIH 401: LSPASVTNSS TYRSWMKRFH SAQHILAGHE AKNMEFPILR ASSRITARLN YLCPQFFPAP GFWSHQHDNN SINPTSLSKC FDSNLGESIS AENLLKFTLR 501: PHGNLGVDRS SIPSRLTALR VMDELLSEIP EISSKTEEIK QLWNGQHNKM MIEEPWLGES TVPSCLENIR RDDMEIVLLG TGSSQPSKYR NVTAIYIDLF 601: SRGSILLDCG EGTLGQLKRR YGLEGADEAV RNLRCIWISH IHADHHTGLA RILARRRELL KGLAHEPAIV VGPRSLKNFL DAYQRLEDLD MEFLDCRNTT 701: TTSWASVETS RPEKNTSSGN AEGSLFSKGS LMQSIYKRPS SPLTDNSSAL PFLKKLKKVL GEMGLEHLIS FPVVHCPQAF GVSLKAAERK NIAGDEIPGW 801: KMVYSGDTRP CPEMVEASKG ATVLIHEATF EDALVEEAVA KNHSTTKEAI KVGSSAGVYR TVLTHFSQRY PKIPVIDESH MHNTCIAFDM MSINMADLHV 901: LPKILPYFKT LFRNQVVEEE EEEEETDDDS LIRDKVPSFF IN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)