AT3G15880.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.371 cytosol 0.290 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WUS-interacting protein 2 | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
WUS-interacting protein 2 (WSIP2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G15750.4); Has 22596 Blast hits to 13790 proteins in 615 species: Archae - 20; Bacteria - 4432; Metazoa - 7625; Fungi - 4980; Plants - 2394; Viruses - 0; Other Eukaryotes - 3145 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5364454..5371869 | ||||||||||||||||
| Molecular Weight (calculated) | 124243.00 Da | ||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||
| Length | 1137 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE 0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV 0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT 0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV 0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK 0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR 0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG 0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA 0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN 0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS 1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV 1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPSDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)