AT3G15870.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Fatty acid desaturase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 5 (TAIR:AT3G15850.1); Has 3450 Blast hits to 3450 proteins in 826 species: Archae - 0; Bacteria - 1558; Metazoa - 797; Fungi - 221; Plants - 106; Viruses - 4; Other Eukaryotes - 764 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:5362911..5364425 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42344.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 361 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMSLSTTLKP LSHFSPFVKR HNPKTNNTLF TLDTHNFTNS FWSKRGGSVS HRKHTVVAVY EAPDHVESSW RRLLSEVVVV RTKRSFWERS WTSWDVSKLV 101: IFVGTHLLSL LAPFYFSWEA FWVFPWLVFI NGICITLSYH RNLSHRSFDL PKWLEYLFAY GGVLAFQGDP IEWVSNHRYH HKHCETQRDP HSPTQGFWFS 201: HMAWIFDTSS ILENCGGEEN VDDLVRQPFY RFLQRTVLLH MMAYSFLFYF CGGMPLLVWG IGITIAVRLH LTFLVNSVCH IWGTRAWNTS DFSKNNWWVA 301: ILTLGEGWHN NHHAFEFSAR HGLEWWQLDI TWCLIRFLEA IGLATNVKLP TETQMKGKAL V |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)