AT3G15740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.947 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14970.1); Has 4927 Blast hits to 4917 proteins in 243 species: Archae - 0; Bacteria - 6; Metazoa - 1464; Fungi - 387; Plants - 2361; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5333879..5334553 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25532.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.14 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 224 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFYVNDNVD NVIDVKRIYN DYDGELRKSQ KLFFDFKVHY TRAEEEDDDV EEEEDFPDFD NLQTLTLEQT HEFDRDWLFG GDGDHSLAIV YHILDSLQVP 101: PYSAIVNTLA DEIKDLKKDG AKDVERVQVK IGVTVSRFPG EDDHVDVQVQ LAVAPANDEA VEMHLETLVV ENEGYCVICM DNIRVGSDVE AGRMPCSHVF 201: HRTCGEEWLR NSGICPVCRA LFPA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)