AT3G15700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G52660.1); Has 8240 Blast hits to 8184 proteins in 274 species: Archae - 5; Bacteria - 45; Metazoa - 1; Fungi - 0; Plants - 8188; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5321136..5322376 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42354.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 375 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKDFKSMVT RCIYVGKEND NVKKLKTATE ELKDLRNIVM KRVKMYEDQQ KLKRLEKVQV WLRQADVAIK EAEEMLITLM SSSSSNGSSM MSFHKLDKKL 101: CKKLKEVQEI KSRGTFDVVV ENSGIGSGSM MISNVDRDDQ TVGLEAVSGL VWRCMTVDNT GIIGLYGVEG VGKTTVLTQV NNRLLQHKLN GFDFVIWVFV 201: SKNVNLEKIQ DTIREKIGFL DRSWMSKTEE EKAGKIFEIL SKRRFALFLD DVWEKVDLVK AGVPPPDGLN RSKIVFTTCS DEVCQEMGAQ TKIKMEKLPW 301: ERAWDLFKMN AGEEIVKSHP DITKVAQEVA AKCDGLPLAL VTIGRAMASK KTPQEWRDAL YILSTSPPNF SGPIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)