AT3G15620.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.974 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA photolyase family protein | ||||||||||||
| Curator Summary (TAIR10) |
Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. | ||||||||||||
| Computational Description (TAIR10) |
UV REPAIR DEFECTIVE 3 (UVR3); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: cryptochrome 3 (TAIR:AT5G24850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5294201..5296548 | ||||||||||||
| Molecular Weight (calculated) | 50611.60 Da | ||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||
| Length | 445 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG 101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS 201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI 301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI 401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQALSP FCFSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)