AT3G15390.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : silencing defective 5 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
silencing defective 5 (SDE5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: production of ta-siRNAs involved in RNA interference; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: smr (Small MutS Related) domain-containing protein (TAIR:AT5G58720.1). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5196689..5198445 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34099.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.90 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||
| Length | 299 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSTEKLLD FSDTKKYADV GISNEVMSKV DPQRQSTSCN QMELQKISQS VGARTFTGSQ EGRNAKNGLE KEVLEALFSG AERYVDKPKV TRHFGERRPG 101: VAGRPVFKPL EDPFQERVVA VKQSSNTSKE DDDENEFKAH RKAVREHLNQ MKEYYGAAAE AFSKGETERA HRLVEKGHFF GQKAREADDK SVAKMIDVNQ 201: EDDSTYEEDE VVTVNMNEHE AKEALRLLKR QLIYFSGISS FKYLRVQLGE KKEDFKSKRK HIVKLLEGES IPWTEEDGGL VIMIRVDEID PKKLSFAKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)