AT3G14950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.851 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetratricopetide-repeat thioredoxin-like 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tetratricopetide-repeat thioredoxin-like 2 (TTL2); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 3 (TAIR:AT2G42580.1); Has 24503 Blast hits to 12270 proteins in 1068 species: Archae - 758; Bacteria - 6003; Metazoa - 6270; Fungi - 2431; Plants - 1839; Viruses - 18; Other Eukaryotes - 7184 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5030216..5032892 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78728.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 721 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKLKKPILE SNCVADKLCD SLNMEDNNND KPDTINVDLG SPITPLQTQP SGLSSSTSSF SSSSSGSVTG HAGHTPPVTR KPDSVQPVPS ASKSKSSNLS 101: SAAKSSKSST TPSSAAQFGG SYSPARAQSR ASSQVGAKTG NIIRPSSNSA SVTTKPSGNK SSVSSKQSLK ILPAGNLVPS GKVQITGMTQ EKPRSMVLGP 201: GAKSYGYGSI IRGNNLSPVK PTMMSDSSSV LPLTLSNNST GGPDAYTSWK IAIYGSNPEE VKRFGNEMFR KGCFAEALKL YDRAIELSPS NATYHSNRAA 301: ALSSLGQIGE AVNECEIAIK LDPNFARAHH RLASLLLRLG YVDNAGIHLY SVEEPLDPTV VKMLQQVDKH LNKCTYARRR GEWSIVLTEV SAAIASGADS 401: SPQLAMCKAE ALLKLLRLDD AQRVLECVPK VEPFPASFSH TRFFDMIAEA YTSFVKSQME LALGRFENAV VTAEKASKID PQNNEVEILY KNVRLITRAR 501: DRGNDLYELE RYTEARSAYA EGLKYDPSNA TLLCYRADCF FKVGMWESSI EDCNHALLIL PSYTKPRLQR AALYTKLERW AEAVSDYEIL RKELPYDKEI 601: AESLFHAQVA LKKSRGEVVL NMEFGGEVEE ISSLEELKAA LTRPASDPQC KEISTFVDAL CVRYPSLHFL KVEIVKCPEV GNAERVRVVP TFKIYKLGIR 701: MKEIVCPSKE ALEKTVRHYG L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)