AT3G14740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 3447 Blast hits to 3310 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1911; Fungi - 561; Plants - 635; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4952185..4953306 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38741.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 341 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAQYQDLPP LKRLRLLQRD LEAAQQHQLP NQPEMKSLQL PAKKRKQTRV DYDDDDAENS NPTYHCLPAK KRIWAIDPDL LSGGGNPFSP FDLNVEYKPY 101: VEEKSIEKKS TLNVESSLEV EEDDDKENID PLGKGKALDL SDREVEDEDG IMCAVCQSTD GDPLNPIVFC DGCDLMVHAS CYGNPLVKAI PEGDWFCRQC 201: LSSKNREKIF SCCLCTTKGG AMKPTNDGRW AHITCALFVP EVYFEDPEGR EGICCSEVLS KRWKDRCYLC KVRRGCVIEC SEMRCKLAFH VTCGLKEDLC 301: IEYREGKKSG GIVVGFCNEH TKLWERESGK YKIVAREEDK K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)