AT3G14710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.844 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 1267 Blast hits to 1249 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4941545..4943055 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50148.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 442 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHPETEQACL VPSSKKTKLC SENFEDKFSS LLESVVSIIL SQLPTAEAVS TSVLSKSWKN IWTNITDLHF DDTKQRDPSD SRFTDFVERV VGDIGSPHIS 101: SFYLCSVNTF DETLLFSWLS KVLKRNLQRL VVTCNDLEII SFSSLFPSFV SLVELRLRTK SILDISAPAI LPNLKFLSLE DARIFNMSSV SKNLVLNFPV 201: LETFEASYCR CFRTDTVIID SPLLRIFEMF KCTSEHVPNP SQVCKIRVLA SKLEKITFCG DEPRKIHLSF PPSLPDAYLA LSRSEWPKTF LRSFTCVTSL 301: ALVLSKDFHV MAVPKFSQLV YLHLIYDMTQ HFRLMQFLKS APILEMLSIR DLTSPRSTPT AKSLKELRSV ESPDCVTTML KVLQIRNFKP NRLQISVLRY 401: VLDNAEILGS VILSSPNPIT EEEKARILAF PKASPHASVL FE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)