AT3G13770.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 37890 Blast hits to 13461 proteins in 236 species: Archae - 0; Bacteria - 8; Metazoa - 36; Fungi - 51; Plants - 37361; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:4519647..4521533 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 70740.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 628 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFNLMRLIHR SFSSSPTNYV LQTILPISQL CSNGRLQEAL LEMAMLGPEM GFHGYDALLN ACLDKRALRD GQRVHAHMIK TRYLPATYLR TRLLIFYGKC 101: DCLEDARKVL DEMPEKNVVS WTAMISRYSQ TGHSSEALTV FAEMMRSDGK PNEFTFATVL TSCIRASGLG LGKQIHGLIV KWNYDSHIFV GSSLLDMYAK 201: AGQIKEAREI FECLPERDVV SCTAIIAGYA QLGLDEEALE MFHRLHSEGM SPNYVTYASL LTALSGLALL DHGKQAHCHV LRRELPFYAV LQNSLIDMYS 301: KCGNLSYARR LFDNMPERTA ISWNAMLVGY SKHGLGREVL ELFRLMRDEK RVKPDAVTLL AVLSGCSHGR MEDTGLNIFD GMVAGEYGTK PGTEHYGCIV 401: DMLGRAGRID EAFEFIKRMP SKPTAGVLGS LLGACRVHLS VDIGESVGRR LIEIEPENAG NYVILSNLYA SAGRWADVNN VRAMMMQKAV TKEPGRSWIQ 501: HEQTLHYFHA NDRTHPRREE VLAKMKEISI KMKQAGYVPD LSCVLYDVDE EQKEKMLLGH SEKLALTFGL IATGEGIPIR VFKNLRICVD CHNFAKIFSK 601: VFEREVSLRD KNRFHQIVDG ICSCGDYW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)