AT3G13010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT transposon superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 542 Blast hits to 530 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 539; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4162931..4164733 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65107.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASIVVNVHD YGTWVEDGAR VQCTFCDKRM NDFNRLKYHL GNVCKDVTPC SQVPLPIREA FFKMVMEQRY PDRKRGRSNK GFTASETAAE AEKLAQMDVA 101: QFFYEHGVDF SAVDSTSFKK MMMIKTVGGE GGGQMIPDSR DLNGWMFQEA LKKVQDRVKE IKASWEITGC SILFDAWIGP KGRDLVTFVA DCPAGAVYLK 201: SADVSDIKTD VTALTSLVNG IVEEVGVRNV TQIIACSTSG WVGDLGKQLA GQVFWSVSLS YCLKLMLVEI GKMYSFEDIF EKVKLLLDLI NNNPSFLYVF 301: RENSHKVDVS SECEFVMPYL TLEHIYWVRR AGLFASPEWK KEQGIAISSF VNDSTFWESL DKIVGSTSSL VHGWLWFSRG SKHVAYAYHF IESIKKNVAW 401: TFKYERQFYE PTWNVIDDVW HNNHNPLHAA GYFLNPMAYY SDDFHTYQHV YTGLAFSLVH LVKEPHLQVK IGTQLDVYRY GRGCFMKASQ AGQLNGVSPV 501: NWWTQKANQY PELQNLAVKI LSQTSEGASR YKLKRSVAEK LLLTEGMSHC ERKHLEELAV VHYNLQLQSC KA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)