AT3G12977.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 1 (TAIR:AT1G56010.2); Has 2993 Blast hits to 2988 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2989; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4143832..4145860 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31947.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.69 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 279 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEETEKNKGS ISMVEANLPP GFRFHPRDDE LVCDYLMRRT VRSLYQPVVL IDVDLNKCEP WDIPQTARVG GKEWYFYSQK DRKYATGYRT NRATATGYWK 101: ATGKDRAIQR NGGLVGMRKT LVFYRGRSPK GRKTDWVMHE FRLQGKLLHH SPNSLEEEWV LCRVFHKNSN GADIDDITRS CSDATASAFM DSYINFDHHH 201: IINQHVPCFS NNLSHNQTNQ SGLISKNSSP LFNASPDQMI LRTLLSQLTK KVEESQSRGD GSSESQLTDI GIPSHAWNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)