AT3G12850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP9 signalosome complex-related / CSN complex-related | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
COP9 signalosome complex-related / CSN complex-related; BEST Arabidopsis thaliana protein match is: 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (TAIR:AT3G61140.1); Has 103 Blast hits to 103 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4088374..4090303 | ||||||||||||||||||||
| Molecular Weight (calculated) | 42194.00 Da | ||||||||||||||||||||
| IEP (calculated) | 5.88 | ||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDIEGDDQLD LDVEAYSRNY EGRNLVLRLL HIAENSVGPM FTDDLELEAL RLAYDLIRND GIVCDMRLFT VIAEKIQGRL GEGYLLDEKW RLTKNNNFVK 101: QDSILRNDLE SATDELEKDR LALRQYWLHY HCGQMAIVFR PYPRQVQTID AYMATLLVAL ETRNFGELPH RSVEQIAYCN VKRAYGFKID CFKSLSNLLE 201: SKYQVTAEGN AVDTIVNPIG QVASHLENVI KPFGPCDYLI DVIKKLLAGH FTDCMTLLEK QRPRLLLDFY LRDHVDNLLS MMRDGGRLRV DSGGMVITES 301: QVKRLMLEGK IKGRIEGQVF CPQMQVKSSE IDDSHEPPPC SVRSHLERVP RTDRIPKMIR KEDTSPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)