AT3G12770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mitochondrial editing factor 22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4057027..4059193 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77939.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 694 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEASCLASP LLYTNSGIHS DSFYASLIDS ATHKAQLKQI HARLLVLGLQ FSGFLITKLI HASSSFGDIT FARQVFDDLP RPQIFPWNAI IRGYSRNNHF 101: QDALLMYSNM QLARVSPDSF TFPHLLKACS GLSHLQMGRF VHAQVFRLGF DADVFVQNGL IALYAKCRRL GSARTVFEGL PLPERTIVSW TAIVSAYAQN 201: GEPMEALEIF SQMRKMDVKP DWVALVSVLN AFTCLQDLKQ GRSIHASVVK MGLEIEPDLL ISLNTMYAKC GQVATAKILF DKMKSPNLIL WNAMISGYAK 301: NGYAREAIDM FHEMINKDVR PDTISITSAI SACAQVGSLE QARSMYEYVG RSDYRDDVFI SSALIDMFAK CGSVEGARLV FDRTLDRDVV VWSAMIVGYG 401: LHGRAREAIS LYRAMERGGV HPNDVTFLGL LMACNHSGMV REGWWFFNRM ADHKINPQQQ HYACVIDLLG RAGHLDQAYE VIKCMPVQPG VTVWGALLSA 501: CKKHRHVELG EYAAQQLFSI DPSNTGHYVQ LSNLYAAARL WDRVAEVRVR MKEKGLNKDV GCSWVEVRGR LEAFRVGDKS HPRYEEIERQ VEWIESRLKE 601: GGFVANKDAS LHDLNDEEAE ETLCSHSERI AIAYGLISTP QGTPLRITKN LRACVNCHAA TKLISKLVDR EIVVRDTNRF HHFKDGVCSC GDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)