AT3G12600.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nudix hydrolase homolog 16 | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nudix hydrolase homolog 16 (NUDT16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 12 (TAIR:AT1G12880.1); Has 1172 Blast hits to 1171 proteins in 346 species: Archae - 0; Bacteria - 480; Metazoa - 236; Fungi - 118; Plants - 233; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4004676..4005995 | ||||||||||||
| Molecular Weight (calculated) | 19407.90 Da | ||||||||||||
| IEP (calculated) | 4.88 | ||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||
| Length | 171 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEQRYEDGS RLVAGCIPFR YVNSDKDGNS ESGKVIQVLM ISSSSGPGLL FPKGGWENDE TVREAAAREA VEEAGVRGIL MDFLGNYEFK SKSHQDEFSP 101: EGLCKAAMYA LYVKEELATW PEHETRTRKW LTIEEAVESC RHPWMKDALV EGFCKWHKEK MVKGEEITGE H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)