AT3G12540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT2G39690.1); Has 544 Blast hits to 542 proteins in 72 species: Archae - 7; Bacteria - 26; Metazoa - 31; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3975246..3977247 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57595.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMQGELEDE QALNKALRDM HRGPVMSQPR LSLLLLPPQV QELIEELATV EAEILCLEKR IQDLKLDVYS EKKENKELED SIDEGEEERM MNPKRLLQRQ 101: NHLPCDADND LIKMRSEDLK QRSKSQSYGD HHVVKDIQMN SPRTHASIGS TMEFSSRIHS STFSDGMSRT QEKNNVQETT PNGVSEDLVK CLMGIYLELN 201: RSSREREGSK TVSKLSLTHL KNASFKRKSV YDHNASNLDP YGAVMGTSLR DIGEYKNFIH ITRTSIDVSR LSDCSTSLVN LRVLKEKLSK VDLSFLNHKK 301: KMAFWINTYN ACVMNGFLEH GLPSSKEKLL TILKMATIDV GGTQLSALDI EGSILQSPCE PRESVSAGES EVRIQTRYGF RCVEPNLMFV LCRGDWSSPA 401: LRVYTAEDVV NELIKARTEY LEASIGVSGR KKIVIPRFLH KRLRDFAEDE GSLIEWICSQ LPPAQRCFQL KETAMEGLNK KSESQLKKLI EVRSHEYEFR 501: YLLAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)