AT3G12440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 4427 Blast hits to 1756 proteins in 258 species: Archae - 2; Bacteria - 264; Metazoa - 1342; Fungi - 272; Plants - 2053; Viruses - 93; Other Eukaryotes - 401 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3951199..3952260 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39722.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.00 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 353 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPRIRSIGS YATQGKFSVD FFGDEFIVTV TSDPSVIGQW IHDVLRFSSR PLVVGVGVQW TPHPTSPPAR YHSPVSYHSD SSPVTHHYDS PPVCYRSDSP 101: PAQYCSVSPP ARYSSDSPPA QYRSVSPPAQ YRSVSPPALY RSVSPPARYR SVSPPVRYRS DSPPAQFRSV SPPARYLSDS PLVRYRSVSP PARYLSVSPP 201: ARYRSVSPPA RSDPPANTLQ LCVGNRCIII QLFYCNRVPH VLRRFLGDRN HTFVGFWNSQ DAGKLKRSRH RLEIAELLDL RNHVVDSRGR GLKGRSFEVV 301: VGECLGYRGV RLEKAIGMSD WSVYDLSYDQ ILQASIDVYV CSKLGFRNRL WEF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)