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AT3G12390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nascent polypeptide-associated complex (NAC), alpha subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nascent polypeptide-associated complex (NAC), alpha subunit family protein; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 3 (TAIR:AT5G13850.1); Has 5275 Blast hits to 2514 proteins in 367 species: Archae - 69; Bacteria - 684; Metazoa - 1880; Fungi - 785; Plants - 552; Viruses - 60; Other Eukaryotes - 1245 (source: NCBI BLink).
Protein Annotations
BioGrid:5752eggNOG:COG1308eggNOG:KOG2239EMBL:AC069474
EMBL:AP002047EMBL:AY048232EMBL:AY094022EMBL:CP002686
EnsemblPlants:AT3G12390EnsemblPlants:AT3G12390.1entrez:820418GeneID:820418
Genevisible:Q9LHG9GO:GO:0005829GO:GO:0009506GO:GO:0009651
GO:GO:0015031GO:GO:0022626Gramene:AT3G12390.1hmmpanther:PTHR21713
HOGENOM:HOG000239674InParanoid:Q9LHG9IntAct:Q9LHG9InterPro:IPR002715
InterPro:IPR016641iPTMnet:Q9LHG9KEGG:ath:AT3G12390KO:K03626
OMA:DEMPQLEPANTHER:PTHR21713PaxDb:Q9LHG9Pfam:PF01849
Pfam:Q9LHG9Pfscan:PS51151PhylomeDB:Q9LHG9PIRSF:PIRSF015901
PRIDE:Q9LHG9PRO:PR:Q9LHG9PROSITE:PS51151ProteinModelPortal:Q9LHG9
Proteomes:UP000006548RefSeq:NP_187845.1SMART:SM01407SMR:Q9LHG9
STRING:3702.AT3G12390.1TAIR:AT3G12390UniGene:At.23572UniProt:Q9LHG9
Coordinates (TAIR10) chr3:+:3942344..3943595
Molecular Weight (calculated) 21983.40 Da
IEP (calculated) 4.07
GRAVY (calculated) -0.71
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)