AT3G12250.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TGACG motif-binding factor 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
basic leucine zipper transcription factor involved in the activation of SA-responsive genes. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TGACG motif-binding factor 6 (TGA6); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3906351..3908583 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39719.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADTSSRTDV STDGDTDHRD LGFYYLYNVT PGRLVPESLG KTWGILPSDR GHMHAAASDS SDRSKDKLDQ KTLRRLAQNR EAARKSRLRK KAYVQQLENS 101: RLKLTQLEQE LQRARQQGVF ISSSGDQAHS TGGNGALAFD AEHSRWLEEK NRQMNELRSA LNAHAGDTEL RIIVDGVMAH YEELFRIKSN AAKNDVFHLL 201: SGMWKTPAER CFLWLGGFRS SELLKLLANQ LEPMTERQVM GINSLQQTSQ QAEDALSQGM ESLQQSLADT LSSGTLGSSS SDNVASYMGQ MAMAMGQLGT 301: LEGFIRQADN LRLQTLQQML RVLTTRQSAR ALLAIHDYSS RLRALSSLWL ARPRE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)