AT3G12000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.939 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : S-locus related protein SLR1, putative (S1) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
S-locus related protein SLR1, putative (S1); FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: receptor kinase 3 (TAIR:AT4G21380.1); Has 3015 Blast hits to 2919 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3014; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3818301..3819620 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50225.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.87 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||
| Length | 439 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGVTPNYYH SYTFFFFFFV VLLALFLHVF SINTLSSTET LTISSNRTIV SPGNIFELGF FKTTTSSRNG DHWYLGIWYK SISERTYVWV ANRDNPLSKS 101: IGTLKISYAN LVLLDHSGTL VWSTNLTRTV KSPVVAELLD NGNFVLRDSK GNYQNRFLWQ SFDYPVDTLL PEMKIGRDLK TGHETFLSSW RSPYDPSSGD 201: FSFKLGTQGL PEFYLFKKEF LLYRSGPWNG VGFSGIPTMQ NWSYFDVVNN FIENRGEVAY SFKVTDHSMH YVRFTLTTER LLQISRWDTT SSEWNLFGVL 301: PTEKCDLYQI CGRDSYCDTK TSPTCNCIKG FVPKNVTAWA LGDTFEGCVR KSRLNCHRDG FFLLMKRMKL PGTSTAIVDK TIGLNECKER CSKDCNCTGF 401: ANKDIQNGGS GCVIWTGGAH GYEELRRRRS RSICQNRPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)