AT3G11964.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding;RNA binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding;RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), RNA-processing protein, HAT helix (InterPro:IPR003107), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G51110.1); Has 43836 Blast hits to 19683 proteins in 2824 species: Archae - 141; Bacteria - 33398; Metazoa - 1103; Fungi - 905; Plants - 756; Viruses - 0; Other Eukaryotes - 7533 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3793957..3806626 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 211617.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1896 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVVPQKKFAN GKRNDSTKSF KPMKKPFKKT KDDVAARSEA MALQLEDVPD FPRGGGTSLS KKEREKLYEE VDAEFDADER VSKKSKGGKS KKRIPSDLDD 0101: LGLLFGGGLH GKRPRYANKI TTKNISPGMK LLGVVTEVNQ KDIVISLPGG LRGLVRASEV SDFTDRGIED DENELLGDIF SVGQLVPCIV LELDDDKKEA 0201: GKRKIWLSLR LSLLHKGFSF DSFQLGMVFS ANVKSIEDHG SILHFGLPSI TGFIEISDDG NQESGMKTGQ LIQGVVTKID RDRKIVHLSS DPDSVAKCLT 0301: KDLSGMSFDL LIPGMMVNAR VQSVLENGIL FDFLTYFNGT VDLFHLKNPL SNKSWKDEYN QNKTVNARIL FIDPSSRAVG LTLSPHVVCN KAPPLHVFSG 0401: DIFDEAKVVR IDKSGLLLEL PSKPTPTPAY VSFKEGNHIR VRVLGLKQME GLAVGTLKES AFEGPVFTHS DVKPGMVTKA KVISVDTFGA IVQFSGGLKA 0501: MCPLRHMSEF EVTKPRKKFK VGAELVFRVL GCKSKRITVT YKKTLVKSKL PILSSYTDAT EGLVTHGWIT KIEKHGCFVR FYNGVQGFVP RFELGLEPGS 0601: DPDSVFHVGE VVKCRVTSAV HGTQRITLND SIKLGSIVSG IIDTITSQAV IVRVKSKSVV KGTISAEHLA DHHEQAKLIM SLLRPGYELD KLLVLDIEGN 0701: NMALSSKYSL IKLAEELPSD FNQLQPNSVV HGYVCNLIEN GCFVRFLGRL TGFAPRSKAI DDPKADVSES FFVGQSVRAN IVDVNQEKSR ITLSLKQSSC 0801: ASVDASFVQE YFLMDEKISD LQSSDITKSD CSWVEKFSIG SLIKGTIQEQ NDLGVVVNFD NINNVLGFIP QHHMGGATLV PGSVVNAVVL DISRAERLVD 0901: LSLRPELLNN LTKEVSNSSK KKRKRGISKE LEVHQRVSAV VEIVKEQHLV LSIPEHGYTI GYASVSDYNT QKLPVKQFST GQSVVASVKA VQNPLTSGRL 1001: LLLLDSVSGT SETSRSKRAK KKSSCEVGSV VHAEITEIKP FELRVNFGNS FRGRIHITEV LVNDASTSDE PFAKFRVGQS ISARVVAKPC HTDIKKTQLW 1101: ELSVKPAMLK DSSEFNDTQE SEQLEFAAGQ CVIGYVYKVD KEWVWLAVSR NVTARIFILD TSCKAHELEE FERRFPIGKA VSGYVLTYNK EKKTLRLVQR 1201: PLLFIHKSIA NGGGSKTDKP DSSIPGDDDT LFIHEGDILG GRISKILPGV GGLRVQLGPY VFGRVHFTEI NDSWVPDPLD GFREGQFVKC KVLEISSSSK 1301: GTWQIELSLR TSLDGMSSAD HLSEDLKNND NVCKRFERIE DLSPDMGVQG YVKNTMSKGC FIILSRTVEA KVRLSNLCDT FVKEPEKEFP VGKLVTGRVL 1401: NVEPLSKRIE VTLKTVNAGG RPKSESYDLK KLHVGDMISG RIRRVEPFGL FIDIDQTGMV GLCHISQLSD DRMENVQARY KAGESVRAKI LKLDEEKKRI 1501: SLGMKSSYLM NGDDDKAQPL SEDNTSMECD PINDPKSEVL AAVDDFGFQE TSGGTSLVLA QVESRASIPP LEVDLDDIEE TDFDSSQNQE KLLGANKDEK 1601: SKRREKQKDK EEREKKIQAA EGRLLEHHAP ENADEFEKLV RSSPNSSFVW IKYMAFMLSL ADIEKARSIA ERALRTINIR EEEEKLNIWV AYFNLENEHG 1701: NPPEESVKKV FERARQYCDP KKVYLALLGV YERTEQYKLA DKLLDEMIKK FKQSCKIWLR KIQSSLKQNE EAIQSVVNRA LLCLPRHKHI KFISQTAILE 1801: FKCGVADRGR SLFEGVLREY PKRTDLWSVY LDQEIRLGED DVIRSLFERA ISLSLPPKKM KFLFKKFLEY EKSVGDEERV EYVKQRAMEY ANSTLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)