AT3G11870.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.864 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Endoribonuclease/protein kinase IRE1-like | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Endoribonuclease/protein kinase IRE1-like; FUNCTIONS IN: endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, mRNA processing; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), KEN domain, ribonuclease activator (InterPro:IPR010513), PUG domain (InterPro:IPR006567), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Endoribonuclease/protein kinase IRE1-like (TAIR:AT2G17520.1); Has 43296 Blast hits to 42939 proteins in 2046 species: Archae - 74; Bacteria - 4886; Metazoa - 17147; Fungi - 4251; Plants - 8096; Viruses - 78; Other Eukaryotes - 8764 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:3746998..3749093 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63263.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 554 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWLLAISLVG LLVVVVCVFL RFSKDKGLDG IVNEKKRDKN SAPRVSASGE DGTKNEQVEK KSDPSGGLGE ENEKTNSESK VLSVPSDQNI NKTLPVMLPS 101: LELRKYDENE TPGKVVNRRL LVSTNEMKYG RNGYEVFQGV YGRRSSVAVK CLDLAHTTEA FIQNEIDNHC LCDDHSNIIR FHGLEQDQSF AYICLEPWKC 201: SLDDLIKLSV RRTKRDTQAV APVDDLEKVM KRIKFWKEKG KPLPLTPMLK LMRDVVCGLA HLHKLKTIHR NLNPQNVLII VKDMTLTAKI SDMSLSKHLG 301: GKKSSYKHLA TCSGSSGWQA PEQLNKDKKK KEDFPADMFN FGCLLHYAVM GTHPFGSPSE RDTNIKTNNK TNLSLVTNLE AINLIEQLLN YKPDLRPSAT 401: QVLLHPLFWD SEKRLFFLRE ASDRIELDIT MWGDLNKTIA PRVLGESKDW ASKLGKTFIT HIENLAQAQP GQESRQYNRS YKYWSLRHLL RLIRNILSHH 501: REILDDPKIK EMVGKVPEGL DIFFTARFPN LMMEIYAFIS MHCKGEEAFE KYFN |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)