AT3G11720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3); Has 2540 Blast hits to 1555 proteins in 284 species: Archae - 0; Bacteria - 328; Metazoa - 676; Fungi - 254; Plants - 148; Viruses - 16; Other Eukaryotes - 1118 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3705991..3708310 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61483.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.62 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||
| Length | 542 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKKRDVSEY RERLNETLSS PELINEQTLK TLVRKQLNEE CSVDILDQRV AALSSTIEKL RSVSTKDQDL SKSSTEASYG DWKVKHDDKD CRVMYREGLK 101: GSPFHTLLVE GCTDGTIEDC LCVCWESSFY EKWWPKLTFP SFRVLEAKCL QKFRIDEQIC LLRVKAPWPL TDREAVLQFF VFEYFKDDLV IILLNSIEVE 201: SGSVAEVNAV RIDFVGGVAI QKVTPEKSYI RFIAEVDIKL DLVPPSLINF MSRQLLGNGF KLFKKTIGSV AESDDYKTVL ADPLYTHIRE ALYSSDKTDE 301: ICQVNELHSQ QGRDCEEKEP KLEADDDMEK ENETRDCENE SVPCKRDVPE IEEEECVDDL KEENKSSPSS SSSSSSSSED EDKNGKTRFC ISPEVKQALG 401: TLERVISMVR KSKTDNNNTS TSSEEEEEEA SSSPMQHSGS TQIVSSSKVC IQDPNTELLD EASFAHYHNS NKIAPASPEI DLTTNSEVTR ITVSQATNLF 501: CQTTENSDDN YKPSGLNGGK SSNLQRKRKP SCFGFRFWRR RT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)