AT3G11390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.734 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11385.1); Has 2141 Blast hits to 1172 proteins in 142 species: Archae - 0; Bacteria - 55; Metazoa - 226; Fungi - 102; Plants - 1594; Viruses - 38; Other Eukaryotes - 126 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3569828..3571960 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 82382.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKEEVSLPL GYNHQSSRKM DKEEVSPLPP PLPPLGFGRY QTRNHKKMDK EEVSPPPPPL PLFGYGRYQT RNHKKMDKEK VPPPPSPHPP LHSLPSSKPE 101: VKPHPRPTGN PICPVSHPSQ PHTLSLRSGR NTKFDCFSCR KHMSPLTYHN YHYYCKTCDM EFHHGCHTFP RKLTHPYHLQ HPLTFTFRNN ETGFLSDGNI 201: DVSFSTTLSS YSNLPGSNKS DHNKFESTES DQCTWCGKYI QGNWFYHCPI CNFCLDLSCS QQSVPLLLVA KPKSHHHPLV FYTRPLLTPC DACGLVNVLE 301: PSYACFQCNY MVHQSCIDLP RVIKITRHEH RLHHTPYLRS TISPCRICYQ PVDIKYGQYY CNRENCSYVV HSKCATHENI WDRKELEWEP EESDEIEDIM 401: PFKKFGSDMI KHFSHDHLLK LETYDGARDA EKQCQACILP INSHDFYNCM ECDFFLHEVC ACLLRKLNHA LHKHTLILDT SPQNHYDLIN CSVCSRKSTG 501: FMYRCSETDC RLLKDQVLQI DVRCILVLDY FTHESHEHPL FICTSSKGEN KICCEGCKEI CQQPYLQCTR CKFAMCYQCT TVPTEVCYKY DKHPLSLCYG 601: EQADDMYWCE ICEKEVNPAD WFYTCNICCI TIHLHCIFGN SVYMKPGLTF EYGFTSKVEV LRNSNSTRPL CVRCGNHCPG YSYYCHIGSY GQWTLKSVTC 701: SLKCLEPYLY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)