AT3G11380.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 4044 Blast hits to 2539 proteins in 107 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2; Plants - 3964; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:3564079..3565779 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62198.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMRHNLQRH AKRILAYSNR PRFFCSYTNV TLSSPATNQT LQSRIEAASH QKAEITTVLE QWLQQQQQQG KQLNPSLLRG IVEKLRSSNR PRQALEVSDW 101: MVEQKMYNLP EDFSARFHLT EKVLNLEEAE KFFESIPENM RFESMYNSLL RSYARQSGEK ALKKAESVFK KMKKLGLLLR PSPYNSMTSL YSSLGNRDKV 201: DEILREMKEN NVELDNVTVN NALRVYAAVS DVATMDKFLA DRKEITRLDG LTMLAMAKAY ELMSLYGEAG EIEDVHRVWD KYKATRQKDN EEFRTLIGSL 301: LKLGDTKGAE KIYYNEWECS GLEFDNRIPD MLVSGYREKG MVMKADKLVN KTLWIRGLAT PITLLLEEMD KKGNKVSPPG LRDLIKNLRD SNQLSKALEA 401: STWMCQKKVF NLFSEDYATR LHLTEKVLGL EEAENFFESS IPENMKDYSV YDTLLSCYAR SSNTQSKAEA VFEKMRELGL QSKLSPFNSL ISLYSGQGKL 501: SVVNILLCDM KHKNIEPDIV TRNNVLRANA YILAIDSMEK V |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)