AT3G11040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.755 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family 85 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family 85 ; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT5G05460.1); Has 486 Blast hits to 477 proteins in 213 species: Archae - 0; Bacteria - 256; Metazoa - 108; Fungi - 38; Plants - 49; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3460143..3463312 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79328.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 701 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPKSNDDDVA QSEAVPLLDL VKPSLPISFP IKALQDLKSR SYFDSFHFQF NRSTVPFRRN SDCLPNRPRV LVCHDMKGGY VDDKWVQGCE NEAGFAIWHW 101: YLMDIFVYFS HSLVTIPPPC WTNTAHRHGV KVLGTFITEW DEGKATCKEM LATKESAQMY AERLAELATA LGFDGWLINI ENDIDEEQIP NMKEFVSHLK 201: KVLHLSTPGA LVIWYDSVTV RGNLQWQDQL TELNKPFFDL CDGIFMNYTW KESYPNLSAE VAGDRKFDVY MGIDVFGRGS FGGGQWTVNA ALDLLKRNNV 301: SAAIFAPGWV YETAQPPNFH TAQNKWWSLV EKSWGIVQTY PQVLPFYSDF NQGFGYHVSL EGRQLSDSPW YNISCQSLQP LLEFNEDNKD IIQVTVDQEG 401: KNVFDFSEQH LNNYYEYDSA REASFNGGGN IVFRGKLKGD AYFTTRLFKP HLQLSSSPIT ISYSVKSDET SNLGILLSFS SPSLETKSIL VAPEDPIRRF 501: DDMSLQCLTT SVQTVSEWTV HEASLVMDGH TLTEISAFCY RPENSTKSAE FVALLGHISV KDHVQNQQNP EILLPASSWV IEAHNVELVP GNSSSKILRV 601: KLEWRQKDLE DSAFTRYNVY AENVKSTDLR PRKVLEKPKS ETVLLGIAHV PAYYVAELVV ESDVKAVRFM VQACGEDASL GKLDEALNLL VDLEGLSVNH 701: D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)