AT3G10480.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAC domain containing protein 50 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAC domain containing protein 50 (NAC050); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 52 (TAIR:AT3G10490.2); Has 2988 Blast hits to 2970 proteins in 99 species: Archae - 4; Bacteria - 3; Metazoa - 28; Fungi - 4; Plants - 2904; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3264410..3266781 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59466.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 526 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG EVDIYKHEPW DLAEKILCSY LALNCFKNFV FACATVMFAC 101: ATVMFALFSK LKTRDQEWYF FSALDKKYGN GARMNRATNK GYWKATGKDR EIRRDIQLLG MKKTLVFHSG RAPDGLRTNW VMHEYRLVEY ETETNGSLLQ 201: DAYVLCRVFH KNNIGPPSGN RYAPFMEEEW ADGGGALIPG IDVRVRVEAL PQANGNNQMD QWADLLKLHN SIKFAITFCR TQLNLTALSN ERCSTREIFI 301: VFWLICKEMH SASKDLININ ELPRDATPMD IEPNQQNHHE SAFKPQESNN HSGYEEDEDT LKREHAEEDE RPPSLCILNK EAPLPLLQYK RRRQNESNNN 401: SSRNTQDHCS STITTVDNTT TLISSSAAAA TNTAISALLE FSLMGISDKK ENQQKEETSP PSPIASPEEK VNDLQKEVHQ MSVERETFKL EMMSAEAMIS 501: ILQSRIDALR QENEELKKKN ASGQAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)