AT3G10116.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.978 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:3126023..3126619 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 19488.00 Da | ||||||||||||||||||||||||
IEP (calculated) | 4.99 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||
Length | 170 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNETRGGYTA NVTIFNYLKY HDIEGPWVLD WIWEDQILLS TVGVQSSNFT IYPDDRNRVM IVELPPQTDD NDDQLIIPTS SKDGGIPRFR EEHDDLAKSS 101: FTFQIDVGRA NLKYHLPAID HVALTTPRGT YICDKLMKVT QTPGYLSKLV EHELRSVAAL GRWEWGHLPQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)