AT3G10040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sequence-specific DNA binding transcription factors | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 3136 Blast hits to 1955 proteins in 249 species: Archae - 4; Bacteria - 147; Metazoa - 846; Fungi - 267; Plants - 330; Viruses - 57; Other Eukaryotes - 1485 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3096580..3097875 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48873.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||
| Length | 431 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESNVMFSGF SPRMLSLEMP QNPPNPQNSI QFQHPHPYTT SGDQQTQPPI KSLYPYASKP KQMSPISGGG CDDEDRGSGS GSGCNPEDSA GTDGKRKLSQ 101: WHRMKWTDTM VRLLIMAVFY IGDEAGLNDP VDAKKKTGGG GGGGGGGGML QKKGKWKSVS RAMVEKGFSV SPQQCEDKFN DLNKRYKRVN DILGKGIACR 201: VVENQGLLES MDHLTPKLKD EVKKLLNSKH LFFREMCAYH NSCGHLGGHD QQPPQQNPIS IPIPSQQQNC FHAAEAGKMA RIAERVEVEE EVESDMAEDS 301: ESEMEESEEE ETRKKRRIST AVKRLREEAA SVVEDVGKSV WEKKEWIRRK MLEIEEKKIG YEWEGVEMEK QRVKWMRYRS KKEREMEKAK LDNQRRRLET 401: ERMILMLRRS EIELNELQSS GTRVDPSSAK G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)