AT3G10000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo sac development arrest 31 (EDA31); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G03680.1); Has 623 Blast hits to 458 proteins in 60 species: Archae - 1; Bacteria - 0; Metazoa - 56; Fungi - 11; Plants - 519; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3076874..3078907 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55505.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||||||||||
| Length | 481 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDHQNHPQY GIEQPSSQFS SDLFGFNLVS APDQHHRLHF TDHEISLLPR GIQGLTVAGN NSNTITTIQS GGCVGGFSGF TDGGGTGRWP RQETLMLLEV 101: RSRLDHKFKE ANQKGPLWDE VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKSGRR QDGKNYRFFR QLEAIYGESK DSVSCYNNTQ FIMTNALHSN 201: FRASNIHNIV PHHQNPLMTN TNTQSQSLSI SNNFNSSSDL DLTSSSEGNE TTKREGMHWK EKIKEFIGVH MERLIEKQDF WLEKLMKIVE DKEHQRMLRE 301: EEWRRIEAER IDKERSFWTK ERERIEARDV AVINALQYLT GRALIRPDSS SPTERINGNG SDKMMADNEF ADEGNKGKMD KKQMNKKRKE KWSSHGGNHP 401: RTKENMMIYN NQETKINDFC RDDDQCHHEG YSPSNSKNAG TPSCSNAMAA STKCFPLLEG EGDQNLWEGY GLKQRKENNH Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)