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AT3G10000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 31 (EDA31); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G03680.1); Has 623 Blast hits to 458 proteins in 60 species: Archae - 1; Bacteria - 0; Metazoa - 56; Fungi - 11; Plants - 519; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AJ630487EMBL:AY568659
EMBL:CP002686EnsemblPlants:AT3G10000EnsemblPlants:AT3G10000.1entrez:820161
ExpressionAtlas:Q700D8GeneID:820161GO:GO:0003700GO:GO:0006355
GO:GO:0010197Gramene:AT3G10000.1hmmpanther:PTHR21654hmmpanther:PTHR21654:SF5
HOGENOM:HOG000006038InterPro:IPR001005InterPro:IPR017877OMA:FWTKERE
Pfam:PF13837Pfscan:PS50090PhylomeDB:Q700D8PROSITE:PS50090
Proteomes:UP000006548RefSeq:NP_187611.2SMART:SM00717SMR:Q700D8
STRING:3702.AT3G10000.1TAIR:AT3G10000tair10-symbols:EDA31UniGene:At.53243
UniProt:Q700D8
Coordinates (TAIR10) chr3:+:3076874..3078907
Molecular Weight (calculated) 55505.70 Da
IEP (calculated) 7.92
GRAVY (calculated) -1.11
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDHQNHPQY GIEQPSSQFS SDLFGFNLVS APDQHHRLHF TDHEISLLPR GIQGLTVAGN NSNTITTIQS GGCVGGFSGF TDGGGTGRWP RQETLMLLEV
101: RSRLDHKFKE ANQKGPLWDE VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKSGRR QDGKNYRFFR QLEAIYGESK DSVSCYNNTQ FIMTNALHSN
201: FRASNIHNIV PHHQNPLMTN TNTQSQSLSI SNNFNSSSDL DLTSSSEGNE TTKREGMHWK EKIKEFIGVH MERLIEKQDF WLEKLMKIVE DKEHQRMLRE
301: EEWRRIEAER IDKERSFWTK ERERIEARDV AVINALQYLT GRALIRPDSS SPTERINGNG SDKMMADNEF ADEGNKGKMD KKQMNKKRKE KWSSHGGNHP
401: RTKENMMIYN NQETKINDFC RDDDQCHHEG YSPSNSKNAG TPSCSNAMAA STKCFPLLEG EGDQNLWEGY GLKQRKENNH Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)