AT3G09620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 99282 Blast hits to 69041 proteins in 3346 species: Archae - 756; Bacteria - 22755; Metazoa - 33531; Fungi - 11762; Plants - 5995; Viruses - 287; Other Eukaryotes - 24196 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2949152..2952205 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111632.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 989 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLEKSKSRKE NDRKDRDRSK KENGRRDTTE MRSRVKRCDS EEEERIRIRR DRKSSDFEEE EYERDSKRRG EDKGRGRRER DRDRGKYLKR DRERREREKE 101: KGRKKQKKER SREDCNEESD DVKCGLKRKR TERSRHGDDD VEKKTRDEQV EDEQKQLAEE VEKRRRRVQE WQELKRQNEE AQIESKGPET GKAWTLDGES 201: DDEVKSDSEM DVDRDTKLEN GGDAKMVASE NETAVTVSEN GGDRAADEDE IDPLDAFMNT MVLPEVEKLS NIVIDGILDF KMNGKETGDQ AKKGFNKAAL 301: GRIIQGEDSD SDYSEPKSDD DPSLDEDDEE FMKRVKKTKA EKLSLVDHSK IEYEPFRKNF YIEVKDISRM TQDAVNAYRK ELELKVHGKD VPRPIQFWHQ 401: TGLTSKILDT LKKLNYEKPM PIQAQALPII MSGRDCIGVA KTGSGKTLGF VLPMLRHIKD QPPVEAGDGP IGLVMAPTRE LVQQIYSDIR KFSKALGIIC 501: VPVYGGSGVA QQISELKRGT EIVVCTPGRM IDILCTSSGK ITNLRRVTYL VMDEADRMFD MGFEPQITRI VQNIRPDRQT VLFSATFPRQ VETLARKVLN 601: KPVEIQVGGR SVVNKDITQL VEIRPESERF SRLLELLGEW YEKGKVLVFV RSQEKSISDF KSDVCNLLIA TSVAARGLDV KELELVVNFD APNHYEDYVH 701: RVGRTGRAGR KGCAVTFISE DDAKYAPDLV KALELSEQPV PDDVKAVAEG FMAKVKQGIE QAHGTGYGGS GFKFNEEEDE VRKAAKKAQA KEYGFEEEKS 801: DSEDENDVVR KAGGDISQQQ ITLAQIAAIA SAASKAPVTA NQLLPNGGGL ATEPGIPPTD GAGRVAAMIA AANVQQYLAK IQADAIPEHY EAELEINDFP 901: QNARWKVTHK ETLGPISEWS GASITTRGKF YEAGRIPGPE ERKLYLFVEG PTEISVKTAK AELKRVLEDI TNQTFSLPGG AQSGRYSVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)