AT3G09360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cyclin/Brf1-like TBP-binding protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cyclin/Brf1-like TBP-binding protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT2G45100.1); Has 20615 Blast hits to 13314 proteins in 1023 species: Archae - 483; Bacteria - 1191; Metazoa - 7169; Fungi - 2226; Plants - 882; Viruses - 261; Other Eukaryotes - 8403 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2873796..2878432 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68013.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 604 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVWCNHCVKN VPGIRPYDGA LACNLCGRIL ENFHFSTEVT FVKNAAGQSQ ASGNIVRSVQ SGITSSRERR FRIARDELMN LKDALGIGDE RDDVIVIAAK 101: FFEMAVEQNF TKGRRTELVQ ASCLYLTCRE LNIALLLIDF SSYLRVSVYE LGSVYLQLCE MLYLVENRNY EKLVDPSIFM DRFSNSLLKG KNNKDVVATA 201: RDIIASMKRD WIQTGRKPSG ICGAALYTAA LSHGIKCSKT DIVNIVHICE ATLTKRLIEF GDTDSGNLNV NELRERESHK RSFTMKPTSN KEAVLCMHQD 301: SKPFGYGLCE DCYKDFINVS GGLVGGSNPP AFQRAEKERM EKAAREENEG GISSLNHDEQ LYSDYCSMSK RGKQCSEKGE KDKDGAEEHA DTSDESDNFS 401: DISDDEVNGY INNEEETHYK TITWTEMNKD YLEEQAAKEA ALKAASEALK ASNSNCPEDA RKAFEAAKAD AAKSRKEKQQ KKAEEAKNAA PPATAVEAVR 501: RTLDKKRLSS VINYDVLESL FDTSAPEKSP KRSKTETDIE KKKEENKEMK SNEHENGENE DEDEEDEEEG NVESYDMKTD FQNGEKFYEE DEEEEEDGND 601: FGLY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)