AT3G09330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.759 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G09340.1); Has 5089 Blast hits to 5044 proteins in 316 species: Archae - 6; Bacteria - 118; Metazoa - 1819; Fungi - 983; Plants - 1434; Viruses - 7; Other Eukaryotes - 722 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2864782..2867230 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57071.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||
| Length | 524 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELEEQERDI LFPTDDEECQ VDVSCDDEDD DSSSYSSLSQ NDSAPWPRSY RQSVDILTGV TPPTISFIHR RSSQTSFTSS VASLYKRRPT SIANSFASST 101: SKQPLLSEKD DVLFLSSQIG LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT GILLKRCLES SSDLRTYPDI 201: GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG 301: SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT 401: AVVVPMTKYA LALTPIVLGL EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC YLSILKGRLS KTQIGICVFI 501: IISGIVSGCC GTYSAIGRLV GKLD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)