AT3G09150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 403 Blast hits to 403 proteins in 61 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2803665..2805333 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37874.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.40 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 327 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSMEFGFS IGSCFKAPNP PVLISASPNK INFTLRRRKK RFLLRVSAVS YKEFAESALE ETRKRIVLEP SHLQYSSMTG LDGKTELQML AFKSSKIRLL 101: RSMAIENETM QVFDFAGFME PEYDTPIFCA NFFTSTNVNI VVLDLNPLHQ LTDQTDYQDK YYNKIMSIYH KYAETFPWGG KLTGESIKFF SPLVMWTRFS 201: SSKEKHKALF SAFLEYYQAW LEMTIQVREE MEPSHVRANC EAQHKYLTWR AQKDPGHGLL KRLVGEAKAK ELLRDFLFNG VDELGTKTFI DYFPEYQTED 301: GTVSDKRSII GKSYETRPWD LTGQFIG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)