AT3G09070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF740) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT5G01170.1); Has 844 Blast hits to 758 proteins in 136 species: Archae - 0; Bacteria - 50; Metazoa - 319; Fungi - 62; Plants - 144; Viruses - 44; Other Eukaryotes - 225 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2768880..2770937 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75444.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.11 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||||||
| Length | 685 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNPATDPVSA AAAALAPPPQ PPQPHRLSTS CNRHPEERFT GFCPSCLCER LSVLDQTNNG GSSSSSKKPP TISAAALKAL FKPSGNNGVG GVNTNGNGRV 101: KPGFFPELRR TKSFSASKNN EGFSGVFEPQ RRSCDVRLRS SLWNLFSQDE QRNLPSNVTG GEIDVEPRKS SVAEPVLEVN DEGEAESDDE ELEEEEEEDY 201: VEAGDFEILN DSGELMREKS DEIVEVREEI EEAVKPTKGL SEEELKPIKD YIDLDSQTKK PSVRRSFWSA ASVFSKKLQK WRQNQKMKKR RNGGDHRPGS 301: ARLPVEKPIG RQLRDTQSEI ADYGYGRRSC DTDPRFSLDA GRFSLDAGRF SVDIGRISLD DPRYSFDEPR ASWDGSLIGR TMFPPAARAP PPPSMLSVVE 401: DAPPPVHRHV TRADMQFPVE EPAPPPPVVN QTNGVSDPVI IPGGSIQTRD YYTDSSSRRR KSLDRSSSSM RKTAAAVVAD MDEPKLSVSS AISIDAYSGS 501: LRDNNNYAVE TADNGSFREP AMMIGDRKVN SNDNNKKSRR WGKWSILGLI YRKSVNKYEE EEEEEEDRYR RLNGGMVERS LSESWPELRN GGGGGGGPRM 601: VRSNSNVSWR SSGGGSARKV NGLDRRNKSS RYSPKNGENG MLKFYLPHMK ASRRMSGTGG AGGGGGGGWA NSHGHSIARS VMRLY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)