AT3G08010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATAB2; FUNCTIONS IN: RNA binding; INVOLVED IN: de-etiolation, chloroplast organization, translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1092 (InterPro:IPR009472); Has 382 Blast hits to 382 proteins in 92 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:2556046..2557426 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41919.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.75 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLGFNTRR IQTPSLPRIP KPSSFTKPIK THHLFSSETL LKRCRFVSRS LPESSLSITK EQEVANEVEE DDPTSELSYL DPESDADSIK EWELDFCSRP 101: ILDSRGKKIW ELVVCDASLS LQVTKYFPNN VINSITLKDA IVTITQDLGV PLPEKIRFFR SQMQTIITKA CKELAIKAVP SKRCLSLFLW LQERYDTVYT 201: RHPGFQKGSL PLLSLDNPFP MNLPENLFGE KWAFVQLPYS AVREEISDFD EKFVFGASLD LDLLGIEVDE NTLIPGLSVA TSRAKPLAAW MNGLEVCSIE 301: ADSSKGCLIL SVGIATRYVY ATYKKTPVTT DEAEAWESAK KTSGGLHFLA IQDDLDSDDC VGFWLLIDLP PPPV |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)