AT3G07920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Translation initiation factor IF2/IF5 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Translation initiation factor IF2/IF5; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 beta subunit (TAIR:AT5G20920.3); Has 1255 Blast hits to 1254 proteins in 354 species: Archae - 270; Bacteria - 0; Metazoa - 344; Fungi - 249; Plants - 177; Viruses - 2; Other Eukaryotes - 213 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2524787..2526229 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 19110.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||
| Length | 164 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADESNENKK EVKDDEQEIL RRVFNILREN SPELVGIWLL TIIWPPQVLR EETAKGTKKT VFVNFMDYCK TMHRNPDHVM AFLLAELGTR GKLDDQQRLV 101: VRGRFTQRDF ESLLRGYILD YVMCIPCKST EAILSKENRL FFLRCGKCGS GRPVAPIKIN FGRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)