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AT3G07830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07820.1); Has 3642 Blast hits to 3624 proteins in 437 species: Archae - 6; Bacteria - 810; Metazoa - 14; Fungi - 1259; Plants - 1446; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G07830-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IVDY
EMBL:AC013483EMBL:CP002686EnsemblPlants:AT3G07830EnsemblPlants:AT3G07830.1
entrez:819974Gene3D:2.160.20.10GeneID:819974GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0009505GO:GO:0071555
Gramene:AT3G07830.1hmmpanther:PTHR31375hmmpanther:PTHR31375:SF37HOGENOM:HOG000237792
InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334
KEGG:ath:AT3G07830OMA:STIFVICPfam:PF00295PhylomeDB:Q9SFD1
PROSITE:PS00502Proteomes:UP000006548RefSeq:NP_187440.1scanprosite:PS00502
SMART:SM00710SMR:Q9SFD1STRING:3702.AT3G07830.1SUPFAM:SSF51126
TAIR:AT3G07830UniGene:At.40295UniProt:Q9SFD1
Coordinates (TAIR10) chr3:-:2499454..2500966
Molecular Weight (calculated) 42915.70 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.10
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSYFGISTI FVICLLGFSA NAHEVLRLTS SPGSDITQAL LRAFTTACQS PTPRKVVIPK GQFKLGEIMM SGPCKSPVEI TLLGTVLADG NSIHGKEKWV
101: VFQRMDGFRL NGGGTFDGEG NAAWRVNNCH KTFECKKLPI SIRFDFVTNA EIRDISSIDA KNFHINVIGA KNMTFDNVKI MAPAESPNTD GIHLGRSVGV
201: SIINSRISTG DDCVSVGDGM VNLLVKNVVC GPGHGISVGS LGRYGHEQDV SGIRVINCTL QETDNGLRIK TWPSAACSTT ASNIHFENII LRNVSNPILI
301: DQEYCPWNQC NKQKSSSIKL ANISFRRIRG TSGNKDAVKL LCSKGYPCEN VQVGDINIQY TGADGPATFM CSNVRPKLVG TQFPKACNTP PVLTQPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)