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AT3G07730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 1299 Blast hits to 1149 proteins in 206 species: Archae - 3; Bacteria - 100; Metazoa - 453; Fungi - 114; Plants - 108; Viruses - 2; Other Eukaryotes - 519 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2QQeggNOG:ENOG410YUAKEMBL:AC009176EMBL:AC013483
EMBL:CP002686EnsemblPlants:AT3G07730EnsemblPlants:AT3G07730.1entrez:819964
GeneID:819964Gramene:AT3G07730.1hmmpanther:PTHR34194hmmpanther:PTHR34194:SF3
HOGENOM:HOG000153444KEGG:ath:AT3G07730ncoils:CoilOMA:DGEECTP
PhylomeDB:Q9S7X5Proteomes:UP000006548RefSeq:NP_187430.1TAIR:AT3G07730
UniGene:At.40308UniProt:Q9S7X5
Coordinates (TAIR10) chr3:+:2468185..2469606
Molecular Weight (calculated) 55322.20 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.94
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKKAIVIDD GYTRFMVNEM SEKIDVPIIC LDEDDDDDDL MVDKEYNVFL DHLRRGDKKS SSTRLEVDNG ASDIRRLKIF SCDSKRSKLG NENPVKNRVN
101: QQSKRKTVGV EVERVKIREI IQRDNRVAER RKRRIAELEA AKTSRDVPSL ETQQEDIQQR DNKVRKLSES KAETLRRDDV PLVKTQEDIQ RDNRVAERRK
201: RKCDDALIKD VPLVRTEEDK RVAVEIDHVE RVHRVTEVND VDETSSRSKE VFVGRRKKNE GSEAVVDKDY MRYLTWLVDS LSDSTTEPME NLQKDDMDTL
301: KESTMVPELD PLVEVKVEPH DDWSDYIIAM GDSPFLDGEE CTPFVASKKV VDLDEGSKEN ESSSSWFRKE LMDVLKNPYD EGEMKQLHRY VSIHKKMTRC
401: RELRKGRGSD YETDELGQSY LESFPDFEKE YKLVVGVDKA RALKLLRGFF FYLKYVSHDG VFKPWEKTQS WQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)