AT3G07290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 55676 Blast hits to 14257 proteins in 295 species: Archae - 7; Bacteria - 69; Metazoa - 798; Fungi - 929; Plants - 52095; Viruses - 0; Other Eukaryotes - 1778 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2321740..2324382 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98064.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.39 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 880 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLIHIRSTR KILALGRHVF PSNAFFSVSS RPSLSSSDEV AAHDVASLLK TPNWEKNSSL KSLVSHMNPN VASQVISLQR SDNDICVRFF MWVCKHSSYC 101: FDPTQKNQLL KLIVSSGLYR VAHAVIVALI KECSRCEKEM LKLMYCFDEL REVFGFRLNY PCYSSLLMSL AKLDLGFLAY VTYRRMEADG FVVGMIDYRT 201: IVNALCKNGY TEAAEMFMSK ILKIGFVLDS HIGTSLLLGF CRGLNLRDAL KVFDVMSKEV TCAPNSVSYS ILIHGLCEVG RLEEAFGLKD QMGEKGCQPS 301: TRTYTVLIKA LCDRGLIDKA FNLFDEMIPR GCKPNVHTYT VLIDGLCRDG KIEEANGVCR KMVKDRIFPS VITYNALING YCKDGRVVPA FELLTVMEKR 401: ACKPNVRTFN ELMEGLCRVG KPYKAVHLLK RMLDNGLSPD IVSYNVLIDG LCREGHMNTA YKLLSSMNCF DIEPDCLTFT AIINAFCKQG KADVASAFLG 501: LMLRKGISLD EVTGTTLIDG VCKVGKTRDA LFILETLVKM RILTTPHSLN VILDMLSKGC KVKEELAMLG KINKLGLVPS VVTYTTLVDG LIRSGDITGS 601: FRILELMKLS GCLPNVYPYT IIINGLCQFG RVEEAEKLLS AMQDSGVSPN HVTYTVMVKG YVNNGKLDRA LETVRAMVER GYELNDRIYS SLLQGFVLSQ 701: KGIDNSEEST VSDIALRETD PECINELISV VEQLGGCISG LCIFLVTRLC KEGRTDESND LVQNVLERGV FLEKAMDIIM ESYCSKKKHT KCMELITLVL 801: KSGFVPSFKS FCLVIQGLKK EGDAERAREL VMELLTSNGV VEKSGVLTYV ECLMEGDETG DCSEVIDLVD QLHCRERPTF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)