AT3G07250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT5G48650.1); Has 5020 Blast hits to 2878 proteins in 309 species: Archae - 0; Bacteria - 77; Metazoa - 2136; Fungi - 614; Plants - 1253; Viruses - 84; Other Eukaryotes - 856 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2300579..2308305 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 144596.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1294 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEKFVEDEN VEVELELELC LSLGGPFKKT EKSKTFGQSN AVGFEKDNGV NLDGRTTNVT RIKETRKKRE AKQQQRSGEE GECKRIRTEY NGVSNGDDMD 0101: LSSINMCNGY GSGRLKESSK DVTIGSPICT SSSVSDPSSS SRQEGGSGDI GAQSGQTKQV RSPVNNILTG TEQTVHNTDG SKDAETQEWS NSSVTKESGK 0201: PPKPHTNSNG NGSLLPFAQM PCVTSTGNGP EGKTVNGFLY RYSKSEISII CVCHGTSFSP AEFIVHAGGT NVSHPLRHIT VGDEFARQYY NTLQNAPENL 0301: YKLYKDKSTI SRPGLDGTMR VFTLSKDLKW RSPGSFDSVK ITSVTSQDSL KQGILVVVYG YLTFNERPAR HFTQVFFLVP QEKGYIVCTD MFRFVDIPEA 0401: NAAIPPANDV IEEKVPETEG AALRVSEPNH GFDNVPKLSC ASEGAAICAK KLPLDATIAF VENAFKQFGE IRRGGVEVRI NWHCTGKYAY VEFEEAEAAN 0501: RAIMASPISI DGYRTYVEKK YAYNKNIKAD AGADTGNGNS QDSQAITEDA HIRVKDLPPN ATVALVESVF KQFGPIKKGR IRVINPANSN YWYAFVEFEE 0601: ADAAKRAIQA SPLNVDGHTT YVEQKQPYYE GYYESPSDGP GNIKRGEGVR GSLGNPICNW QKMEEVRGTD VYDLQNWQKI MNQSEEQMKF QEEEGRQYNQ 0701: NRYTSEEVRG TEGVGLEEEE EEEENQNWEE QRKIQEEEGT ESHEASVFLK RLPLDVTFAL IEDALKKFGP INAISIIKSG PLYKFAFVDF EKADVANRAI 0801: MASPVRICEK NVNVQKKLSA GAGKRYTRPT CRDTSVPLGA GHREQGSQNR YGSEQVRGTE AFDFWDWQWQ KSKEEQSKLQ EEEGEIQVDH SWEEEHSKVL 0901: EEESKLQEEA VETQVDHSWD YEQIMEEQEE EESKQNQTSY IEDIAAFFSE HYYNNLQNSP EILPGYYKDV SKITRPGLDG TMRSSTLPDI IEDLDMLSPG 1001: GFDSVEVTSV MSQDSHDKGI RVAVDGYFTF NERPARNFTQ NFTFAPQEKG LFVSTDMFKF VGIPEANATI PPANNAAICV KNLPLNATIA LVENAFKQFG 1101: EIRRGGVEVR NKRSFSYGFV EFKEENAAQR AIKASPVTID LRSVYVEKKR PDYIRYWDTP STGPGIIYRS EGMSVTKDYG NKGGNENNQE PRALYAAVHV 1201: KNLPPNVTTD WVENAFKQFG PIKRGGVQVS NRGVGNWFGN VKFVHAAAAE RAVNPQVLLI MLPGMNLIQA SPLLIGRRKL KVKKKLDQRV QNQN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)