AT3G07005.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : low-molecular-weight cysteine-rich 43 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
low-molecular-weight cysteine-rich 43 (LCR43); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin-like protein, Arabidopsis (InterPro:IPR022618); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 44 (TAIR:AT3G06985.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2212063..2212413 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 8766.86 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.22 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.23 | ||||||||||||||||||||||||||||
| Length | 78 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MNYKIGIMSL LVITSIIFLF LVPDKVEAQK ECIGPCDMFT DCQAACVGIR KGYNYGQCVA WKPKDDDPFT CCCYKLTP | ||||||||||||||||||||||||||||
| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)