AT3G06778.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.532 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chaperone DnaJ-domain superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G19570.1); Has 18848 Blast hits to 18845 proteins in 3064 species: Archae - 137; Bacteria - 8171; Metazoa - 3106; Fungi - 1452; Plants - 1923; Viruses - 12; Other Eukaryotes - 4047 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2140249..2141437 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26715.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.23 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||
| Length | 229 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKIRPGPDP KAALVSDILA LSRSPISCIH INRISSGSCF IDWYLILGIQ EDAEVKVIRK RYHKLALKVH PDKNNHPKAD IAFKLIHEAY LCLSDETKRR 101: SFNIDRRNNI CLKCSRVSHK SKENRNDSKP NRFCQTLKDI RDKFREENMV IERCLKTNSA FFMGNRTNET PPVYGIPKQN RINKESPVFN PSDYRLWGYP 201: HVRNRVFDYN LSSDWNMFTR SRSTCVHSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)