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AT3G06460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.834
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GNS1/SUR4 membrane protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GNS1/SUR4 membrane protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane protein family (TAIR:AT3G06470.1); Has 2223 Blast hits to 2217 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 1419; Fungi - 367; Plants - 108; Viruses - 14; Other Eukaryotes - 315 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRWTeggNOG:KOG3071EMBL:AC011623EMBL:AY072418
EMBL:AY114715EMBL:CP002686EnsemblPlants:AT3G06460EnsemblPlants:AT3G06460.1
entrez:819823GeneID:819823GO:GO:0016021Gramene:AT3G06460.1
hmmpanther:PTHR11157hmmpanther:PTHR11157:SF13HOGENOM:HOG000240342InterPro:IPR002076
InterPro:IPR030457KEGG:00062+2.3.1.199KEGG:ath:AT3G06460OMA:TMAVGCT
PANTHER:PTHR11157Pfam:PF01151PhylomeDB:Q9SQU9PROSITE:PS01188
Proteomes:UP000006548RefSeq:NP_187297.1scanprosite:PS01188STRING:3702.AT3G06460.1
TAIR:AT3G06460TMHMM:TMhelixUniGene:At.40519UniProt:Q9SQU9
Coordinates (TAIR10) chr3:+:1982681..1983577
Molecular Weight (calculated) 34000.90 Da
IEP (calculated) 9.57
GRAVY (calculated) 0.53
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVYSTLTY WLVHHPYIAN FTWTEGETLG STVFFVFVVV SLYLSATFLL RYTVDSLPTL GPRILKPITA VHSLILFLLS LTMAVGCTLS LISSSDPKAR
101: LFDAVCFPLD VKPKGPLFFW AQVFYLSKIL EFVDTLLIIL NKSIQRLSFL HVYHHATVVI LCYLWLRTRQ SMFPVGLVLN STVHVIMYGY YFLCAIGSRP
201: KWKKLVTNFQ MVQFAFGMGL GAAWMLPEHY FGSGCAGIWT VYFNGVFTAS LLALFYNFHS KNYEKTTTSP LYKIESFIFI HGERWANKAI TLFSKKND
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)