AT3G05900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : neurofilament protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
neurofilament protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 108105 Blast hits to 59732 proteins in 2949 species: Archae - 957; Bacteria - 23784; Metazoa - 40626; Fungi - 12056; Plants - 5351; Viruses - 591; Other Eukaryotes - 24740 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1761408..1763854 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73457.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.00 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||
| Length | 673 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASDSHTPTV TTPEKPLENK VSEEAKLMEK EIISSDSADV VNDKPASDSN PVVTKEEEID QTPAGEPEKE SPAVVEEVGA VVKAEESTET VKHENGEKGA 101: EQVELKEPIL VKETVAEVNV ETVDTEKAEE KQTVENVLIE DHKDQEETKI VDVSESTDEA EVQQVEPVDV QPVKDAEKAE EKPTVESVVE EETKDREETK 201: IVDVSESAGD KQVESVDVQS VRDVSAEIAE EKVKDVEALE VEPKPETSEK VETQLEKARE LETEVEVVKA EETAEATEQA KVELEGKLED VIVEEKDSEI 301: NSKDEKTSES GSALCSEEIL STIQESNTDP IKETEGDASY PIDVIEKAIT EEKHVVDEPA NEEKPSESSA ALSPEKVVPI NQDSDTKPKE ETEGDAAAPA 401: DVIEKAITEE KYVVDEPSKD ETTSESGSAL CPEKAVPTNQ DLDTEPKKET EEDVSSPADI IEKAITEEKH VVEEPSKDEK TSESGSALSP EKVVPTNQDS 501: DTEPKKETEG DVPSPADVIE KAITDEKHVV EEPLKDEQEN VSEAKDVVTK LAAEDENIKK DTDTPVAEGK SEETLKETDT ESVEKEAAAN KQEEPITEKV 601: AEVVETAPVA KEIDEAKQQP EVTTKEAPAK QKHSNSIISK VKQSLVKAKK AIIGRSPSSK TITTEEPKEE IKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)